A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and DNA

Analysis code for figures

Authors

Affiliations

Merle Skribbe

Friedrich Miescher Institute for Biomedical Research

University of Basel

Charlotte Soneson

Friedrich Miescher Institute for Biomedical Research

SIB Swiss Institute of Bioinformatics

Michael B Stadler

Friedrich Miescher Institute for Biomedical Research

University of Basel

SIB Swiss Institute of Bioinformatics

Michaela Schwaiger

Friedrich Miescher Institute for Biomedical Research

SIB Swiss Institute of Bioinformatics

Vishnu Narayanan Suma Sreechakram

Institute for Genetics, Justus-Liebig-University Giessen

Vytautas Iesmantavicius

Friedrich Miescher Institute for Biomedical Research

Daniel Hess

Friedrich Miescher Institute for Biomedical Research

Eliza Pandini Figueiredo Moreno

Friedrich Miescher Institute for Biomedical Research

Sigurd Braun

Institute for Genetics, Justus-Liebig-University Giessen

Jan Seebacher

Friedrich Miescher Institute for Biomedical Research

Sebastien Smallwood

Friedrich Miescher Institute for Biomedical Research

Marc Bühler

Friedrich Miescher Institute for Biomedical Research

University of Basel

Interactive data exploration with TFexplorer

You can interactively explore IP-MS and ChIP-seq data using TFexplorer at: https://data.fmi.ch/TFexplorer/

Links to raw data

Raw and processed data generated as part of this study is available from:

• IP-MS data (PRIDE): PXD054070
• RNA-seq data (GEO): GSE274238
• ChIP-seq data (GEO): GSE274240

Links to publication

The accompanying manuscript is available from:

• bioRxiv: A comprehensive Schizosaccharomyces pombe atlas of physical transcription factor interactions with proteins and chromatin. Skribbe et al. bioRxiv 2024.08.20.607873; doi: https://doi.org/10.1101/2024.08.20.607873

Links to code for generating figures

All source code is available from GitHub at https://github.com/fmicompbio/Spombe_TFome. Click on a specific figure below to jump directly to the corresponding sources.

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